The United Way of the Flint Hills invests in programs at the following organizations:
- American Red Cross
- Building Blocks Community Child Care Center
- Camp Alexander
- CASA of the 8th Judicial District
- Catholic Charities of Northeast Kansas
- Cerebral Palsy Research Foundation
- Coffey County Resource Council
- Communities in Schools of Mid-America
- Cradle to Career Literacy Center
- Crosswinds Counseling & Wellness
- Emporia Child Care
- Food for Students
- Girl Scouts of Kansas Heartland
- Help House of Osage County
- Housing and Credit Counseling, Inc.
- Jayhawk Area Boy Scouts
- Kansas Big Brothers & Big Sisters (serving Lyon County)
- Kansas Children's Service League
- Kansas Legal Services
- LEAP!
- Morris County Care & Share
- Sacred Heart Child Care Center
- SOS, Inc.
- The Salvation Army